Standard curves — plot_standard_curve

Plot standard curve samples of a plate of a given analyte.

Usage

plot_standard_curve_analyte(
  plate,
  analyte_name,
  data_type = "Median",
  decreasing_rau_order = TRUE,
  log_scale = c("all"),
  plot_line = TRUE,
  plot_blank_mean = TRUE,
  plot_rau_bounds = TRUE,
  plot_legend = TRUE,
  legend_position = "bottom",
  verbose = TRUE,
  ...
)

Arguments

plate: A plate object
analyte_name: Name of the analyte of which standard curve we want to plot.
data_type: Data type of the value we want to plot - the same datatype as in the plate file. By default equals to Net MFI
decreasing_rau_order: If TRUE the RAU values are plotted in decreasing order, TRUE by default
log_scale: Which elements on the plot should be displayed in log scale. By default "RAU". If NULL or c() no log scale is used, if "all" or c("RAU", "MFI") all elements are displayed in log scale.
plot_line: If TRUE a line is plotted, TRUE by default
plot_blank_mean: If TRUE the mean of the blank samples is plotted, TRUE by default
plot_rau_bounds: If TRUE the RAU values bounds are plotted, TRUE by default
plot_legend: If TRUE the legend is plotted, TRUE by default
legend_position: the position of the legend, a possible values are c(right, bottom, left, top, none). Is not used if plot_legend equals to FALSE.
verbose: If TRUE prints messages, TRUE by default
...: Additional parameters, ignored here. Used here only for consistency with the SerolyzeR pipeline

Value

ggplot object with the plot

Examples

path <- system.file("extdata", "CovidOISExPONTENT.csv",
  package = "SerolyzeR", mustWork = TRUE
)
layout_path <- system.file("extdata", "CovidOISExPONTENT_layout.xlsx",
  package = "SerolyzeR", mustWork = TRUE
)
plate <- read_luminex_data(path, layout_filepath = layout_path, verbose = FALSE)
#> Could not parse datetime string using default datetime format. Trying other possibilies.
#> Successfully parsed datetime string using order: mdY IMS p
plot_standard_curve_analyte(plate, "Spike_6P", plot_legend = FALSE, data_type = "Median")
#> legend_position parameter is specified, but the plot_legend is disabled. Won't show the legend.