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Changelog

Source: NEWS.md

Version 1.2.0

  • added dissemination about the PvSTATEM project
  • added consistent axis naming
  • updated the multiplate tutorial with real data

Version 1.1.0

CRAN release: 2025-03-19

  • added vignette on multiplate functionalities
  • added more verbose error and warning messages
  • added warnings in HTML report
  • added option to select a custom separator in xPONENT format
  • bug fixes

Version 1.0.0

CRAN release: 2025-03-07

  • package name changed from PvSTATEM to SerolyzeR

Version 0.2.2

  • CRAN re-upload due to nplr package problems
  • docs updates
  • bug fixes

Version 0.2.1

  • updated the multiple plate report layout
  • merged output files of process_dir
  • accelerated the model fitting
  • reading plate made less restrictive - added an option to skip some datatypes
  • bug fixes

Version 0.2.0

  • added processing of multiple plates
  • added stacked plot, levey-jennings plot and multiple plate report
  • fixed the search option in the documentation

Version 0.1.3

  • fixed an issue with writing into the home user’s directory
  • fixed an issue with reading plate files containing empty wells in the middle of the layout
  • added a badge displaying coverage status

Version 0.1.2

  • uploaded missing vignettes that were removed in the previous release

Version 0.1.1

  • released the package to CRAN
  • fixed minor formatting issues

Version 0.1.0

  • enhanced and unified file saving for generate_plate_report and process_plate
  • reduced HTML report size and improved its structure
  • removed extraneous column from RAU output
  • added notes field in the HTML report
  • made nplr warnings more informative
  • added vignette for generate_plate_report function
  • limited the amount of data frame presented in the vignettes

Version 0.0.5

  • added function generate_plate_report generating the html report
  • added nMFI normalisation type
  • added an option to include raw MFI in the output of the process_plate function
  • renamed output of the model to RAU (Relative Antibody Unit), which should be more interpretable for human
  • simple censoring of the extrapolation

Version 0.0.4

  • met the CRAN policy
  • fixed the issue templates
  • added the plate object view options

Version 0.0.3

  • refactored the whole package structure to simplify the usage
  • added a new, much faster parser for the xPONENT and INTELLIFLEX files
  • model encapsulation for the standard curve fitting
  • added new plots - MFI chart and layout plot
  • updated blank adjustment function
  • error fixes

Version 0.0.2

  • added new datasets to the package
  • sample standard curve plotting
  • GitHub actions
  • tests with coverage calculation

Version 0.0.1

  • initial package structure with simple reading functionality