Standard curves

Plot standard curve samples of a plate of a given analyte.

Usage

plot_standard_curve_analyte(
  plate,
  analyte_name,
  data_type = "Median",
  decreasing_rau_order = TRUE,
  log_scale = c("all"),
  plot_line = TRUE,
  plot_blank_mean = TRUE,
  plot_rau_bounds = TRUE,
  plot_legend = TRUE,
  verbose = TRUE
)

Arguments

plate

A plate object

analyte_name

Name of the analyte of which standard curve we want to plot.

data_type

Data type of the value we want to plot - the same datatype as in the plate file. By default equals to Net MFI

decreasing_rau_order

If TRUE the RAU values are plotted in decreasing order, TRUE by default

log_scale

Which elements on the plot should be displayed in log scale. By default "RAU". If NULL or c() no log scale is used, if "all" or c("RAU", "MFI") all elements are displayed in log scale.

plot_line

If TRUE a line is plotted, TRUE by default

plot_blank_mean

If TRUE the mean of the blank samples is plotted, TRUE by default

plot_rau_bounds

If TRUE the RAU values bounds are plotted, TRUE by default

plot_legend

If TRUE the legend is plotted, TRUE by default

verbose

If TRUE prints messages, TRUE by default

Value

ggplot object with the plot

Examples

path <- system.file("extdata", "CovidOISExPONTENT.csv",
  package = "PvSTATEM", mustWork = TRUE
)
layout_path <- system.file("extdata", "CovidOISExPONTENT_layout.xlsx",
  package = "PvSTATEM", mustWork = TRUE
)
plate <- read_luminex_data(path, layout_filepath = layout_path, verbose = FALSE)
plot_standard_curve_analyte(plate, "Spike_6P", plot_legend = FALSE, data_type = "Median")