Plot MFI value distribution for a given analyte
Usage
plot_mfi_for_analyte(
plate,
analyte_name,
data_type = "Median",
plot_type = "violin",
scale_y = "log10",
plot_outliers = FALSE
)
Arguments
- plate
A plate object
- analyte_name
The analyte to plot
- data_type
The type of data to plot. Default is "Median"
- plot_type
The type of plot to generate. Default is "violin". Available options are "boxplot" and "violin".
- scale_y
What kind of transformation of the scale to apply. By default MFI is presented in a "log10" scale. Available options are described in the documentation of scale_y_continuous under
transform
parameter.- plot_outliers
When using "boxplot" type of a plot one can set this parameter to TRUE and display the names of samples for which MFI falls outside the 1.5 IQR interval